Package: geneticae
Title: Statistical Tools for the Analysis of Multi Environment
        Agronomic Trials
Version: 1.0.1
Authors@R: c(
  person(given = "Julia",
         family = "Angelini",
         role = c("aut", "cre"),
         email = "jangelini_93@hotmail.com",
         comment = c(ORCID = "0000-0002-5815-1771")
         ),
  person(given = "Marcos",
         family = "Prunello",
         role = c("aut"),
         email = "marcosprunello@gmail.com",
         comment = c(ORCID = "0000-0002-9611-527X")
         ),
  person(given = "Gerardo",
         family = "Cervigni",
         role = c("aut")
         )
  )
Description: Provides tools for the analysis of multi-environment
        agronomic trials, with a specific focus on plant breeding
        experiments. Implements the Additive Main effects and
        Multiplicative Interaction (AMMI) model (Gauch, 1992,
        ISBN:9780444892409) and the Site Regression (SREG) model
        (Cornelius, 1996, <doi:10.1201/9780367802226>). To ensure
        reliable results even with outliers or missing data, it
        includes robust versions of AMMI (Rodrigues et al., 2016,
        <doi:10.1093/bioinformatics/btv533>) and SREG (Angelini et al.,
        2022, <doi:10.1080/15427528.2022.2051217>). Furthermore, the
        package offers advanced imputation techniques for
        multi-environment data, covering classical methodologies
        (Arciniegas-Alarcón et al., 2014, <doi:10.2478/bile-2014-0006>)
        and recently published imputation methods for MET data
        (Angelini et al., 2024, <doi:10.1007/s10681-024-03344-z>).
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Imports: stats, ggforce, ggplot2, scales, MASS, pcaMethods, rrcov,
        dplyr, missMDA, tidyr, rlang, corpcor
Suggests: agridat, spelling, knitr, rmarkdown, patchwork, testthat
VignetteBuilder: knitr
Depends: R (>= 2.12.0)
URL: https://jangelini.github.io/geneticae/,
        https://github.com/jangelini/geneticae
BugReports: https://github.com/jangelini/geneticae/issues
Language: en-US
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev make
        libicu-dev libuv1-dev libx11-dev zlib1g-dev
Repository: https://jangelini.r-universe.dev
Date/Publication: 2026-04-20 22:43:16 UTC
RemoteUrl: https://github.com/jangelini/geneticae
RemoteRef: HEAD
RemoteSha: f008699ae30cb7f1fa35182a4afb98e02723713a
NeedsCompilation: no
Packaged: 2026-06-19 07:47:31 UTC; root
Author: Julia Angelini [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5815-1771>),
  Marcos Prunello [aut] (ORCID: <https://orcid.org/0000-0002-9611-527X>),
  Gerardo Cervigni [aut]
Maintainer: Julia Angelini <jangelini_93@hotmail.com>