Package: geneticae 0.4.9000

geneticae: Statistical Tools for the Analysis of Multi Environment Agronomic Trials

Data from multi environment agronomic trials, which are often carried out by plant breeders, can be analyzed with the tools offered by this package such as the Additive Main effects and Multiplicative Interaction model or 'AMMI' ('Gauch' 1992, ISBN:9780444892409) and the Site Regression model or 'SREG' ('Cornelius' 1996, <doi:10.1201/9780367802226>). Since these methods present a poor performance under the presence of outliers and missing values, this package includes robust versions of the 'AMMI' model ('Rodrigues' 2016, <doi:10.1093/bioinformatics/btv533>), and also imputation techniques specifically developed for this kind of data ('Arciniegas-Alarcón' 2014, <doi:10.2478/bile-2014-0006>).

Authors:Julia Angelini [aut, cre], Marcos Prunello [aut], Gerardo Cervigni [aut]

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Bug tracker:https://github.com/jangelini/geneticae/issues

On CRAN:

4 exports 0.74 score 141 dependencies 22 scripts 269 downloads

Last updated 2 years agofrom:080275d709. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:GGEmodelGGEPlotimputationrAMMI

Dependencies:abindbackportsbase64encBiobaseBiocGenericsbitbit64bootbroombslibcachemcalibratecarcarDataclicliprclustercodetoolscolorspacecowplotcpp11crayoncrosstalkDEoptimRDerivdigestdoBydoParalleldplyrDTellipseemmeansestimabilityevaluateFactoMineRfansifarverfastmapflashClustfontawesomeforcatsforeachfsgenericsGGEBiplotsggforceggplot2ggrepelglmnetgluegtablehavenhighrhmshtmltoolshtmlwidgetshttpuvisobanditeratorsjomojquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmemoisemgcvmicemicrobenchmarkmimeminqamissMDAmitmlmodelrmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivordinalpanpbkrtestpcaMethodspcaPPpillarpkgconfigplyrpolyclipprettydocprettyunitsprogresspromisespurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreadrreshape2rlangrmarkdownrobustbaserpartrrcovsassscalesscatterplot3dshapeSparseMstringistringrsurvivalsystemfontstibbletidyrtidyselecttinytextweenrtzdbucminfutf8vctrsviridisLitevroomwithrxfunyaml